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DOI :10.26650/tjbc.1327318   IUP :10.26650/tjbc.1327318    Tam Metin (PDF)

Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye

Taylan DoğaroğluEvin GünençRümeysa Yeşim ManapVatan TaşkınBelgin Göçmen TaşkınErsin Doğaç

Objective: The genus Liquidambar, is one of many woody genera with morphologically similar species in America, Southeast Europe, and Asia and is thought to have existed on Earth for about 65 million years. Liquidambar orientalis (Anatolian sweetgum tree) is distributed in southwestern Türkiye. With this study, it was aimed to reveal the sequence differences of the psaA/ycf3 inter-gene space region of chloroplast DNA (cpDNA) in L. orientalis populations for the first time in the scientific literature.

Materials and Methods: In addition, the polymorphism levels, and the molecular evolution of the studied gene region of the L. orientalis populations were investigated. 154 samples were collected from 12 different populations belonging to four provinces, Muğla, Burdur, Antalya, and Aydın, and were studied and the psaA/ycf3 gene encoded by chloroplast DNA was analysed by partial base sequence analysis.

Results: Haplotype diversity (h) and the average nucleotide diversity (π) values for all populations were found to be 0.52933 ± 0.011, and 0.00086 ± 0.0001, respectively. According to the results of our research, the gene flow level (Nm) among the populations was 1.40. FST values revealed statistically significant genetic differences between the Fethiye-Yanıklar population of Muğla province and other studied populations.

Conclusion: According to the results of the study, Fethiye-Yanıklar, Marmaris-National Park, and Fethiye-İnlice locations, where the highest genetic diversities detected among the studied populations, were found to be important in terms of conservation studies.


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DIŞA AKTAR



APA

Doğaroğlu, T., Günenç, E., Manap, R.Y., Taşkın, V., Göçmen Taşkın, B., & Doğaç, E. (2023). Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye. Turkish Journal of Bioscience and Collections, 7(2), 45-58. https://doi.org/10.26650/tjbc.1327318


AMA

Doğaroğlu T, Günenç E, Manap R Y, Taşkın V, Göçmen Taşkın B, Doğaç E. Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye. Turkish Journal of Bioscience and Collections. 2023;7(2):45-58. https://doi.org/10.26650/tjbc.1327318


ABNT

Doğaroğlu, T.; Günenç, E.; Manap, R.Y.; Taşkın, V.; Göçmen Taşkın, B.; Doğaç, E. Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye. Turkish Journal of Bioscience and Collections, [Publisher Location], v. 7, n. 2, p. 45-58, 2023.


Chicago: Author-Date Style

Doğaroğlu, Taylan, and Evin Günenç and Rümeysa Yeşim Manap and Vatan Taşkın and Belgin Göçmen Taşkın and Ersin Doğaç. 2023. “Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye.” Turkish Journal of Bioscience and Collections 7, no. 2: 45-58. https://doi.org/10.26650/tjbc.1327318


Chicago: Humanities Style

Doğaroğlu, Taylan, and Evin Günenç and Rümeysa Yeşim Manap and Vatan Taşkın and Belgin Göçmen Taşkın and Ersin Doğaç. Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye.” Turkish Journal of Bioscience and Collections 7, no. 2 (Mar. 2024): 45-58. https://doi.org/10.26650/tjbc.1327318


Harvard: Australian Style

Doğaroğlu, T & Günenç, E & Manap, RY & Taşkın, V & Göçmen Taşkın, B & Doğaç, E 2023, 'Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye', Turkish Journal of Bioscience and Collections, vol. 7, no. 2, pp. 45-58, viewed 3 Mar. 2024, https://doi.org/10.26650/tjbc.1327318


Harvard: Author-Date Style

Doğaroğlu, T. and Günenç, E. and Manap, R.Y. and Taşkın, V. and Göçmen Taşkın, B. and Doğaç, E. (2023) ‘Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye’, Turkish Journal of Bioscience and Collections, 7(2), pp. 45-58. https://doi.org/10.26650/tjbc.1327318 (3 Mar. 2024).


MLA

Doğaroğlu, Taylan, and Evin Günenç and Rümeysa Yeşim Manap and Vatan Taşkın and Belgin Göçmen Taşkın and Ersin Doğaç. Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye.” Turkish Journal of Bioscience and Collections, vol. 7, no. 2, 2023, pp. 45-58. [Database Container], https://doi.org/10.26650/tjbc.1327318


Vancouver

Doğaroğlu T, Günenç E, Manap RY, Taşkın V, Göçmen Taşkın B, Doğaç E. Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye. Turkish Journal of Bioscience and Collections [Internet]. 3 Mar. 2024 [cited 3 Mar. 2024];7(2):45-58. Available from: https://doi.org/10.26650/tjbc.1327318 doi: 10.26650/tjbc.1327318


ISNAD

Doğaroğlu, Taylan - Günenç, Evin - Manap, RümeysaYeşim - Taşkın, Vatan - Göçmen Taşkın, Belgin - Doğaç, Ersin. Genetic Structure and Phylogenetic Analysis of Liquidambar orientalis Mill. (Altingiaceae) Populations Based on Non-Coded psaA/ycf3 Intergenic Region in The Chloroplast Genome in Türkiye”. Turkish Journal of Bioscience and Collections 7/2 (Mar. 2024): 45-58. https://doi.org/10.26650/tjbc.1327318



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Gönderim14.07.2023
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