Review Article


DOI :10.26650/HT.2023.1345916   IUP :10.26650/HT.2023.1345916    Full Text (PDF)

Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring

Abuzer ÇelekliÖzgür Eren Zariç

Herbaria collections—systematic repositories where plant specimens are preserved—are transitioning from traditional taxonomic tools into fundamental resources in ecological research. This comprehensive review summarizes multidisciplinary applications of herbaria collections in monitoring biodiversity and conservation. The review evaluates the historical and contemporary importance of herbaria specimens in documenting changes in species distribution, population dynamics, and community composition, elucidating their roles in understanding the effects of climate change and human intervention. Moreover, it examines how herbaria collections contribute to large-scale temporal and spatial biodiversity analyses, predictive modeling, and conservation planning in the context of advancements in digitization and molecular techniques. This review underscores the integration of herbaria data into mainstream ecological research and policy decisions, advocating for modernizing herbarium techniques and the innovative use of collections. It aims to foster a deeper understanding of complex environmental systems and inform targeted conservation strategies by revealing the multifaceted uses and expectations of herbaria in ecological studies. Thus, it contributes to the broader scientific discussion on sustainable biodiversity management and highlights the relationship between herbaria and ecological studies.

DOI :10.26650/HT.2023.1345916   IUP :10.26650/HT.2023.1345916    Full Text (PDF)

Herbaryumun Ekolojik Çalışmalarda Kullanımı: Biyoçeşitlilik ve Alan İzleme

Abuzer ÇelekliÖzgür Eren Zariç

Herbaryumların koleksiyonları, bitki örneklerinin korunduğu sistematik depolar, geleneksel taksonomik araçlardan ekolojik araştırma alanında temel kaynaklara dönüşmektedir. Bu kapsamlı inceleme, herbaryumların biyoçeşitlilik izleme ve koruma konularında çok disiplinli uygulamalarını bir araya getirmektedir. Türlerin dağılımı, popülasyon dinamikleri ve topluluk bileşimindeki değişiklikleri belgeleme konusunda herbaryum örneklerinin tarihsel ve güncel önemini kritik bir şekilde değerlendirmektedir, özellikle iklim değişikliği ve insan müdahalesinin etkilerini anlamada rollerini açıklamaktadır. Dijitalleştirme ve moleküler tekniklerdeki son gelişmeler sonucunda, herbaryumların koleksiyonları büyük ölçekli zamansal ve mekansal biyoçeşitlilik analizlerine, öngörü modellerine ve koruma planlamasına nasıl katkı sağladığı incelenmektedir. Bu inceleme, herbaryumlara ait verilerin ana akım ekolojik araştırma ve politika kararlarına zorunlu entegrasyonunu vurgular, herbaryum tekniklerinin modernleştirilmesi ve mevcut koleksiyonların yenilikçi kullanımını belirtmektedir. Kompleks çevresel sistemlerin daha derin bir anlayışını teşvik etmeyi amaçlar ve herbaryumların ekolojik çalışmalardaki çok yönlü kullanım ve beklentilerini ortaya koyarak hedeflenen koruma stratejilerine katkı sağlar. Böylece, sürdürülebilir biyoçeşitlilik yönetimi üzerine geniş bilimsel tartışmaya katkı sağlayıp herbaryumlar ile ekolojik çalışmalar arasındaki ilişkiyi vurgular.


PDF View

References

  • Albani Rocchetti, G., Armstrong, C. G., Abeli, T., Orsenigo, S., Jasper, C., Joly, S., Bruneau, A., Zytaruk, M., & Vamosi, J. C. (2021). Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species. New Phytologist, 230(2), 433-450. https://doi. org/10.1111/nph.17133 google scholar
  • Amici, V., Geri, F., Bonini, I., & Rocchini, D. (2014). Ecological niche modelling with herbarium data: A framework to improve Natura 2000 habitat monitoring. Applied Ecology and Environmental Research, 12(3), 645-659. google scholar
  • Belhumeur, P. N., Chen, D., Feiner, S., Jacobs, D. W., Kress, W. J., Ling, H., Lopez, I., Ramamoorthi, R., Sheorey, S., White, S., & Zhang, L. (2008). Searching the world’s Herbaria: A system for visual identification of plant species. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5305 LNCS(PART 4), 116-129. https://doi.org/10.1007/978-3-540-88693-8_9 google scholar
  • Besnard, G., Christin, P. A., Male, P. J. G., Lhuillier, E., Lauzeral, C., Coissac, E., & Vorontsova, M. S. (2014). From museums to genomics: Old herbarium specimens shed light on a C3 to C4 transition. Journal of Experimental Botany, 65(22), 6711-6721. https://doi.org/10.1093/jxb/eru395 google scholar
  • Bieker, V. C., & Martin, M. D. (2018). Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections. Botany Letters, 165(3-4), 409-418. https://doi.org/10.1080/23818107.2018.1458651 google scholar
  • Bogart, R. (2008). Strategic communications and its critical role in bird habitat conservation:Bogart, R. (2008). Strategic communications and its critical role in bird habitat conservation: understanding the social-ecological landscape. Tundra to Tropics: Connecting Birds,. Tundra to Tropics: Connecting Birds, Habitats, and People, 2009(April), 441-452. http:// www.partnersinflight.org/pubs/McAllenProc/articles/PIF09_ Education_Communication/Bogart_PIF09.pdf google scholar
  • Brock, P. M., Döring, H., & Bidartondo, M. I. (2009). How to know unknown fungi: The role of a herbarium. New Phytologist, 181(3), 719-724. https://doi.org/10.1111/j.1469-8137.2008.02703.x google scholar
  • Cazalis, V., Santini, L., Lucas, P. M., Gonzalez-Suarez, M., Hoffmann, M., Benftez-Lopez, A., Pacifici, M., Schipper, A. M., Böhm, M., Zizka, A., Clausnitzer, V., Meyer, C., Jung, M., Butchart, S. H. M., Cardoso, P., Mancini, G., Reşit Akçakaya, H., Young, B. E., Patoine, G., & Di Marco, M. (2023). Prioritizing the reassessment of data deficient species on the IUCN Red List. Conservation Biology, n/a(n/a), e14139. https://doi.org/10.1111/cobi.14139 google scholar
  • Çelekli, A., Yaygır, S., & Zariç, Ö. E. (2023). A review of climate change-induced migration. Acta Biologica Turcica, 36(2), A3:1-11. https://doi.org/10.5281/zenodo.8190755 google scholar
  • Çelekli, A., & Zariç, Ö. E. (2023). Hydrobiology and ecology in the context of climate change: the future of aquatic ecosystems. 6th International Eurasian Conference on Biological and Chemical Sciences, 539-545. https://doi.org/10.5281/zenodo.10021473 google scholar
  • Çiftçi, A., Mollman, R., Kaleli, B., Çapar, A., & Erol, O. (2023). Teaching Old Collections New Tricks: Initial Findings of the ISTF Herbarium Digitization Project*. Herbarium Turcicum, 0(1), 26-33. https:// doi.org/10.26650/ht.2023.1246170 google scholar
  • Davis, C. C. (2023). The herbarium of the future. Trends in Ecology and Evolution, 38(5), 412-423. https://doi.org/10.1016/j. tree.2022.11.015 google scholar
  • DeSalle, R., & Amato, G. (2004). The expansion of conservation genetics. Nature Reviews Genetics, 5(9), 702-712. https://doi. org/10.1038/nrg1425 google scholar
  • European Environment Agency. (2021). CORINE Land Cover - User Manual. Copernicus Land Monitoring Service, 1.0(European Environment Agency/European Topic Centre Urban Land and Soil), 128. google scholar
  • Friedman, J., Yaniv, Z., Dafni, A., & Palewitch, D. (1986). A preliminary classification of the healing potential of medicinal plants, based on a rational analysis of an ethnopharmacological field survey among Bedouins in the Negev Desert, Israel. Journal of Ethnopharmacology, 16(2-3), 275-287. https://doi. org/10.1016/0378-8741(86)90094-2 google scholar
  • Gallagher, R. V., Hughes, L., & Leishman, M. R. (2009). Phenological trends among Australian alpine species: Using herbarium records to identify climate-change indicators. Australian Journal of Botany, 57(1), 1-9. https://doi.org/10.1071/BT08051 google scholar
  • Greve, M., Lykke, A. M., Fagg, C. W., Gereau, R. E., Lewis, G. P., Marchant, R., Marshall, A. R., Ndayishimiye, J., Bogaert, J., & Svenning, J. C. (2016). Realising the potential of herbarium records for conservation biology. South African Journal of Botany, 105, 317-323. https://doi.org/10.1016/j. sajb.2016.03.017 google scholar
  • Heberling, J. M. (2022). Herbaria As Big Data Sources of Plant Traits. International Journal of Plant Sciences, 183(2), 87-118. https:// doi.org/10.1086/717623 google scholar
  • Henderson, W. G. (2011). George Maxwell: Bushman and naturalist. Early Days: Journal of the Royal Western Australian Historical Society, 13(5), 626-648. google scholar
  • Huettmann, F., & Ickert-Bond, S. M. (2017). On open access, data mining and plant conservation in the Circumpolar North with an online data example of the Herbarium, University of Alaska Museum of the North. Arctic Science, 4(4), 433-470. google scholar
  • Hulme, P. E. (2020). Plant invasions in New Zealand: global lessons in prevention, eradication and control. Biological Invasions, 22(5), 1539-1562. https://doi.org/10.1007/s10530-020-02224-6 google scholar
  • James, S. A., Soltis, P. S., Belbin, L., Chapman, A. D., Nelson, G., Paul, D. L., & Collins, M. (2018). Herbarium data: Global biodiversity and societal botanical needs for novel research: Global. Applications in Plant Sciences, 6(2), e1024. https://doi. org/10.1002/aps3.1024 google scholar
  • Jones, C. A., & Daehler, C. C. (2018). Herbarium specimens can reveal impacts of climate change on plant phenology; a review of methods and applications. PeerJ, 2018(4), e4576. https://doi. org/10.7717/peerj.4576 google scholar
  • Lang, P. L. M., Willems, F. M., Scheepens, J. F., Burbano, H. A., & Bossdorf, O. (2019). Using herbaria to study global environmental change. New Phytologist, 221(1), 110-122. https://doi.org/10.1111/nph.15401 google scholar
  • Lavoie, C. (2013). Biological collections in an ever changing world: Herbaria as tools for biogeographical and environmental studies. Perspectives in Plant Ecology, Evolution and Systematics, 15(1), 68-76. https://doi.org/10.1016/j.ppees.2012.10.002 google scholar
  • Lima, D. F., Mello, J. H. F., Lopes, I. T., Forzza, R. C., Goldenberg, R., & Freitas, L. (2021). Phenological responses to climate change based on a hundred years of herbarium collections of tropical Melastomataceae. PLoS ONE, 16(5), e0251360. https://doi. org/10.1371/journal.pone.0251360 google scholar
  • Moss, B. (1983). The ecology of algae. Journal of Applied Ecology, 20(1), 343-344. https://doi.org/10.2307/2403401 google scholar
  • Nualart, N., Ibanez, N., Soriano, I., & Lopez-Pujol, J. (2017). Assessing the Relevance of Herbarium Collections as Tools for Conservation Biology. Botanical Review, 83(3), 303-325. https:// doi.org/10.1007/s12229-017-9188-z google scholar
  • Papini, A., Mosti, S., & Santosuosso, U. (2013). Tracking the origin of the invading Caulerpa (Caulerpales, Chlorophyta) with geographic profiling, a criminological technique for a killer alga. Biological Invasions, 15, 1613-1621. google scholar
  • Rawal, D. S., Kasel, S., Keatley, M. R., & Nitschke, C. R. (2015). Herbarium records identify sensitivity of flowering phenology of eucalypts to climate: Implications for species response to climate change. Austral Ecology, 40(2), 117-125. https://doi. org/10.1111/aec.12183 google scholar
  • Rivers, M. C., Bachman, S. P., Meagher, T. R., Lughadha, E. N., & Brummitt, N. A. (2010). Subpopulations, locations and fragmentation: Applying IUCN red list criteria to herbarium specimen data. Biodiversity and Conservation, 19(7), 20712085. https://doi.org/10.1007/s10531-010-9826-9 google scholar
  • Sanderson, M. A., Skinner, R. H., Barker, D. J., Edwards, G. R., Tracy, B. F., & Wedin, D. A. (2004). Plant species diversity and management of temperate forage and grazing land ecosystems. Crop Science, 44(4), 1132-1144. https://doi.org/10.2135/ cropsci2004.1132 google scholar
  • Santosuosso, U., & Papini, A. (2018). Geo-Profiling: beyond the Current Limits. A Preliminary Study of Mathematical Methods to Improve the Monitoring of Invasive Species. Russian Journal of Ecology, 49(4), 362-370. https://doi.org/10.1134/ S1067413618040112 google scholar
  • Schmidt, M., Kreft, H., Thiombiano, A., & Zizka, G. (2005). Herbarium collections and field data-based plant diversity maps for Burkina Faso. Diversity and Distributions, 11(6), 509-516. https://doi. org/10.1111/j.1366-9516.2005.00185.x google scholar
  • Soltis, P. S. (2017). Digitization of herbaria enables novel research. American Journal of Botany, 104(9), 1281-1284. https://doi. org/10.3732/ajb.1700281 google scholar
  • Stevenson, M. D., Rossmo, D. K., Knell, R. J., & Le Comber, S. C. (2012). Geographic profiling as a novel spatial tool for targeting the control of invasive species. Ecography, 35(8), 704-715. https://doi.org/10.1111/j.1600-0587.2011.07292.x google scholar
  • Thiers, B. M., Tulig, M. C., & Watson, K. A. (2016). Digitization of The New York Botanical Garden Herbarium. Brittonia, 68(3), 324333. https://doi.org/10.1007/s12228-016-9423-7 google scholar
  • Ward, M., & Howald, A. (2005). the California Native Plant Society’S Rare Plant Program: 37 Years of Plant Science. Fremontia, 17. google scholar
  • Wu, S. H., Rejmanek, M., Grotkopp, E., & DiTomaso, J. M. (2005). Herbarium records, actual distribution, and critical attributes of invasive plants: Genus Crotalaria in Taiwan. Taxon, 54(1), 133138. https://doi.org/10.2307/25065311 google scholar
  • Zariç, Ö. E., Yeşildağ, İ., Yaygır, S., & Çelekli, A. (2022). Removal of Harmful Dyes Using Some Algae. 3rd International Congress on Plant Biology, 173. https://doi.org/10.5281/zenodo.8190776 google scholar

Citations

Copy and paste a formatted citation or use one of the options to export in your chosen format


EXPORT



APA

Çelekli, A., & Zariç, Ö.E. (2022). Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring. Herbarium Turcicum, 0(0), -. https://doi.org/10.26650/HT.2023.1345916


AMA

Çelekli A, Zariç Ö E. Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring. Herbarium Turcicum. 2022;0(0):-. https://doi.org/10.26650/HT.2023.1345916


ABNT

Çelekli, A.; Zariç, Ö.E. Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring. Herbarium Turcicum, [Publisher Location], v. 0, n. 0, p. -, 2022.


Chicago: Author-Date Style

Çelekli, Abuzer, and Özgür Eren Zariç. 2022. “Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring.” Herbarium Turcicum 0, no. 0: -. https://doi.org/10.26650/HT.2023.1345916


Chicago: Humanities Style

Çelekli, Abuzer, and Özgür Eren Zariç. Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring.” Herbarium Turcicum 0, no. 0 (May. 2024): -. https://doi.org/10.26650/HT.2023.1345916


Harvard: Australian Style

Çelekli, A & Zariç, ÖE 2022, 'Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring', Herbarium Turcicum, vol. 0, no. 0, pp. -, viewed 5 May. 2024, https://doi.org/10.26650/HT.2023.1345916


Harvard: Author-Date Style

Çelekli, A. and Zariç, Ö.E. (2022) ‘Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring’, Herbarium Turcicum, 0(0), pp. -. https://doi.org/10.26650/HT.2023.1345916 (5 May. 2024).


MLA

Çelekli, Abuzer, and Özgür Eren Zariç. Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring.” Herbarium Turcicum, vol. 0, no. 0, 2022, pp. -. [Database Container], https://doi.org/10.26650/HT.2023.1345916


Vancouver

Çelekli A, Zariç ÖE. Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring. Herbarium Turcicum [Internet]. 5 May. 2024 [cited 5 May. 2024];0(0):-. Available from: https://doi.org/10.26650/HT.2023.1345916 doi: 10.26650/HT.2023.1345916


ISNAD

Çelekli, Abuzer - Zariç, ÖzgürEren. Utilization of Herbaria in Ecological Studies: Biodiversity and Landscape Monitoring”. Herbarium Turcicum 0/0 (May. 2024): -. https://doi.org/10.26650/HT.2023.1345916



TIMELINE


Submitted18.08.2023
Accepted21.12.2023
Published Online25.12.2023

LICENCE


Attribution-NonCommercial (CC BY-NC)

This license lets others remix, tweak, and build upon your work non-commercially, and although their new works must also acknowledge you and be non-commercial, they don’t have to license their derivative works on the same terms.


SHARE




Istanbul University Press aims to contribute to the dissemination of ever growing scientific knowledge through publication of high quality scientific journals and books in accordance with the international publishing standards and ethics. Istanbul University Press follows an open access, non-commercial, scholarly publishing.